S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Rpn4p	YCL040W	PubMed Haugen AC et al., Genome biology, 2004;5(12):R95	Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4741	Stress	Synthetic complete medium after 2h exposure to 100 microM AsIII (30.C).	N/A
		PubMed Salin H et al., BMC genomics, 2008 Jul 15;9():333	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4742	Unstressed log-phase growth (control)	Grown in YPD medium at 30 ºC to and A600 of 0.5. Transcription factor gene deletion.	2.905
			Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4742	Stress	Grown in YPD medium at 30 ºC to and A600 of 0.5. Sodium selenite (1 mM) treatment for 40 min. Transcription factor gene deletion.	1.026
			Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4742	Stress	Grown in YPD medium at 30 ºC to and A600 of 0.5. Sodium selenite (1 mM) treatment for 60 min. Transcription factor gene deletion.	0.308
			Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4742	Stress	Grown in YPD medium at 30 ºC to and A600 of 0.5. Sodium selenite (1 mM) treatment for 80 min. Transcription factor gene deletion.	0.097
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Negative	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	-0.76503940620911