S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Rpn4p	YDL007W	PubMed Mannhaupt G et al., FEBS letters, 1999 Apr 30;450(1-2):27-34	Direct	EMSA	N/A	S288c	In vitro	in vitro	N/A
		PubMed Salin H et al., BMC genomics, 2008 Jul 15;9():333	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4742	Unstressed log-phase growth (control)	Grown in YPD medium at 30 ºC to and A600 of 0.5. Transcription factor gene deletion.	0.089
			Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4742	Stress	Grown in YPD medium at 30 ºC to and A600 of 0.5. Sodium selenite (1 mM) treatment for 40 min. Transcription factor gene deletion.	0.978
			Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4742	Stress	Grown in YPD medium at 30 ºC to and A600 of 0.5. Sodium selenite (1 mM) treatment for 60 min. Transcription factor gene deletion.	1.038
			Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4742	Stress	Grown in YPD medium at 30 ºC to and A600 of 0.5. Sodium selenite (1 mM) treatment for 80 min. Transcription factor gene deletion.	1.175
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	0.57625836718366
		PubMed Zhang N et al., Open biology, 2013 May 22;3(5):120137	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Stress	Rapamycin and/or MG132 induced transcription of RPT2	N/A
		PubMed Zhang T et al., FEMS microbiology letters, 2017 Dec 1;364(22):	Indirect	RT-PCR - wt vs TF mutant	Positive	W303	Unstressed log-phase growth (control)	YPD 30.C	N/A