S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition	Log2FC
Rim101p	YDR043C	PubMed Lamb TM et al., Molecular and cellular biology, 2003 Jan;23(2):677-86	Direct	ChIP	N/A	YC11	Cells expressing Rim101-HAp grown to exponential phase in YPD medium	N/A
			Indirect	Northern blot - wt vs TF mutant	Negative	SK1	Cells grown to exponential phase in YPD medium	N/A
			Indirect	Microarray analysis - WT vs TF Deletion	Negative	TLY941	Yeast growth media (yeast-peptone-dextrose [YPD], yeast-peptone-acetate, and synthetic complete) were of standard composition	N/A
		PubMed Weiss P et al., Eukaryotic cell, 2008 Nov;7(11):1888-94	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	Low glucose	N/A
		PubMed Shock TR et al., Eukaryotic cell, 2009 Apr;8(4):606-16	Indirect	Microarray analysis - wt vs TF mutant	Negative	S288c	20 mM propionic acid (cells cultivated in YNB (yeast nitrogen base), 2% glucose and 2.65 g/L NH4(SO4)2)	N/A
		PubMed Yazawa H et al., Yeast (Chichester, England), 2009 Mar;26(3):167-84	Indirect	RT-PCR - wt vs TF mutant	Negative	YHU3201	Alkaline stress - 240 mM K2HPO4	N/A
		PubMed Nishizawa M et al., Eukaryotic cell, 2010 Jun;9(6):943-51	Indirect	Northern blot - wt vs TF mutant	Negative	S288c	SD medium	N/A
		PubMed Zhao Y et al., Journal of molecular cell biology, 2013 Oct;5(5):336-44	Direct	ChIP	N/A	S288c	Cells were grown up to A 600 1.0â€“1.5 in 50 ml SD-HIS medium. Nrg 1-HA was detected by the monoclonal anti-HA antibody	N/A
		PubMed Read T et al., PLoS genetics, 2016 Jan;12(1):e1005746	Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	L6441	Cells were grown in 100 ml of CSD (Chelex-treated synthetic defined medium) containing <100 nM of zinc. Cells were inoculated from overnight cultures into CSD at an initial OD600 = 0.01 and grown to mid-log phase (OD600 ≈ 0.5) before RNA isolation.	-3.11074562074475
			Indirect	RNA-seq analysis - WT vs TF Deletion	Negative	L6441	Grown to mid-log phase in standard YPD media. Transcription factor gene deletion.	-3.11074562074475