Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Msn2p YFL014W PubMed external link Martínez-Pastor MT et al., The EMBO journal, 1996 May 1;15(9):2227-35Martínez-Pastor MT et al., The EMBO journal, 1996 May 1;15(9):2227-35 Indirect lacZ - wt vs TF mutant Positive S288c Stress 7% ethanol 20min N/A
PubMed external link Schmitt AP et al., Proceedings of the National Academy of Sciences of the United States of America, 1996 Jun 11;93(12):5777-82Schmitt AP et al., Proceedings of the National Academy of Sciences of the United States of America, 1996 Jun 11;93(12):5777-82 Indirect Northern blot - wt vs TF overexpression Positive S288c Stress Methylmethane sulfonate stress N/A
PubMed external link Smith A et al., The EMBO journal, 1998 Jul 1;17(13):3556-64Smith A et al., The EMBO journal, 1998 Jul 1;17(13):3556-64 Indirect Northern blot - wt vs TF mutant Positive S288c Unstressed log-phase growth (control) SC medium; mid-log phase N/A
PubMed external link Treger JM et al., The Journal of biological chemistry, 1998 Oct 9;273(41):26875-9Treger JM et al., The Journal of biological chemistry, 1998 Oct 9;273(41):26875-9 Indirect Northern blot - wt vs TF mutant Positive JT659 Stress Heat-shock treatment N/A
PubMed external link McBride HJ et al., The Journal of biological chemistry, 1999 Jul 23;274(30):21029-36McBride HJ et al., The Journal of biological chemistry, 1999 Jul 23;274(30):21029-36 Indirect Northern blot - wt vs TF mutant Positive S288c Stress 0,7M NaCl 60min N/A
PubMed external link Boy-Marcotte E et al., Molecular microbiology, 1999 Jul;33(2):274-83Boy-Marcotte E et al., Molecular microbiology, 1999 Jul;33(2):274-83 Indirect Proteomics - wt vs TF mutant Positive W303-A Stress Heat-shock: Exponential-phase cells shifted from 25C to 38C N/A
PubMed external link Epstein CB et al., Molecular biology of the cell, 2001 Feb;12(2):297-308Epstein CB et al., Molecular biology of the cell, 2001 Feb;12(2):297-308 Indirect Microarray analysis - wt vs TF mutant Positive S288c Stress YPD medium + 0,05M succinic acid, pH 4,0 N/A
PubMed external link Amorós M et al., Molecular microbiology, 2001 Mar;39(6):1523-32Amorós M et al., Molecular microbiology, 2001 Mar;39(6):1523-32 Indirect Northern blot - wt vs TF mutant Positive S288c Carbon source quality/availability Carbon source starvation N/A
Indirect Northern blot - wt vs TF mutant Positive S288c Stress Heat shock N/A
Indirect Northern blot - wt vs TF mutant Positive S288c Stress Osmotic stress N/A
Indirect Northern blot - wt vs TF mutant Positive S288c Stress oxidative stress N/A
PubMed external link Hasan R et al., Molecular microbiology, 2002 Jul;45(1):233-41Hasan R et al., Molecular microbiology, 2002 Jul;45(1):233-41 Indirect Proteomics - wt vs TF mutant Positive YPH98 Stress Oxidative stess; cells grown in YNB medium to exponential phase exposed to 0.5 mM H2O2 for 30 min N/A
Indirect 2D electrophoresis (WT vs msn2DELTAmsn4DELTAyap1DELTA triple mutant) Positive YPH98 Stress Oxidative stess; cells grown in YNB medium to exponential phase exposed to 0.5 mM H2O2 for 30 min N/A
PubMed external link Kandror O et al., Molecular cell, 2004 Mar 26;13(6):771-81Kandror O et al., Molecular cell, 2004 Mar 26;13(6):771-81 Indirect Northern blot - wt vs TF mutant N/A S288c N/A N/A N/A
PubMed external link Lai LC et al., Molecular and cellular biology, 2005 May;25(10):4075-91Lai LC et al., Molecular and cellular biology, 2005 May;25(10):4075-91 Indirect Microarray analysis - wt vs TF mutant Negative S288c Oxygen availability SSGal-TEA medium + anaerobiosis (2 generations) N/A
PubMed external link Chua G et al., Proceedings of the National Academy of Sciences of the United States of America, 2006 Aug 8;103(32):12045-50Chua G et al., Proceedings of the National Academy of Sciences of the United States of America, 2006 Aug 8;103(32):12045-50 Indirect Microarray analysis - wt vs TF overexpression Positive N/A Carbon source quality/availability Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h N/A
PubMed external link Eastmond DL et al., The Journal of biological chemistry, 2006 Oct 27;281(43):32909-21Eastmond DL et al., The Journal of biological chemistry, 2006 Oct 27;281(43):32909-21 Indirect Microarray analysis - wt vs TF mutant Positive W303-1A Stress Cells grown in YPAD at 30.C to mid-log phase (A600 of 0.5) submitted to heat-shock (37.C, 15 min) N/A
PubMed external link Erkina TY et al., Molecular and cellular biology, 2008 Feb;28(4):1207-17Erkina TY et al., Molecular and cellular biology, 2008 Feb;28(4):1207-17 Direct ChIP N/A S288c Unstressed log-phase growth (control) YPD medium; mid-log phase N/A
PubMed external link Melamed D et al., RNA (New York, N.Y.), 2008 Jul;14(7):1337-51Melamed D et al., RNA (New York, N.Y.), 2008 Jul;14(7):1337-51 Indirect Northern blot - wt vs TF mutant Positive S288c Stress Osmotic stress; Exponential phase cells cultivated in YPD growth medium supplemented with1 M NaCl N/A
PubMed external link Berry DB et al., Molecular biology of the cell, 2008 Nov;19(11):4580-7Berry DB et al., Molecular biology of the cell, 2008 Nov;19(11):4580-7 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 Stress YPD+0.7 M NaCl 45min N/A
PubMed external link Capaldi AP et al., Nature genetics, 2008 Nov;40(11):1300-6Capaldi AP et al., Nature genetics, 2008 Nov;40(11):1300-6 Indirect Microarray analysis - wt vs TF mutant Positive S288c Stress YPD medium containing 0,8M glucose (glucose "osmotic" stress) N/A
PubMed external link Ni L et al., Genes & development, 2009 Jun 1;23(11):1351-63Ni L et al., Genes & development, 2009 Jun 1;23(11):1351-63 Direct Chip-on-chip N/A S288c Stress SD medium + NaCl 0,6M 30' N/A
PubMed external link Kelley R et al., PLoS genetics, 2009 May;5(5):e1000488Kelley R et al., PLoS genetics, 2009 May;5(5):e1000488 Indirect Microarray analysis - wt vs TF mutant Positive BY4741 Stress YPD 30.C from 0.1 mM H2O2 to 0.4 mM H2O2 N/A
PubMed external link Hazelwood LA et al., Applied and environmental microbiology, 2009 Nov;75(21):6876-85Hazelwood LA et al., Applied and environmental microbiology, 2009 Nov;75(21):6876-85 Indirect Microarray analysis - wt vs TF mutant Positive IMZ066 Nitrogen source quality/availability Nitrogen-limiting (45 g/L glucose, 1 g/L (NH4)2SO4, 5.3 g/L K2SO4, 3 KH2PO4, 0.5 g/L MgSO4.7H2O, 0.0045 g/L ZnSO4.7H2O) N/A
PubMed external link Watanabe D et al., Applied and environmental microbiology, 2011 Feb;77(3):934-41Watanabe D et al., Applied and environmental microbiology, 2011 Feb;77(3):934-41 Indirect RT-PCR - wt vs TF mutant Positive S288c Complex industrial media Sake mash on day 5 N/A
PubMed external link Kim HS et al., Applied microbiology and biotechnology, 2011 Aug;91(4):1159-72Kim HS et al., Applied microbiology and biotechnology, 2011 Aug;91(4):1159-72 Indirect Northern blot - wt vs TF mutant Negative S288c Stress YPD+10%ethanol, 30 min N/A
PubMed external link Sadeh A et al., Molecular biology of the cell, 2011 Sep;22(17):3127-38Sadeh A et al., Molecular biology of the cell, 2011 Sep;22(17):3127-38 Indirect GFP - wt vs TF mutant Positive S288c Unstressed log-phase growth (control) SC medium; mid-log phase N/A
PubMed external link Huebert DJ et al., Molecular and cellular biology, 2012 May;32(9):1645-53Huebert DJ et al., Molecular and cellular biology, 2012 May;32(9):1645-53 Direct Chip-on-chip N/A S288c Stress H2O2 treatment N/A
PubMed external link Stewart-Ornstein J et al., Current biology : CB, 2013 Dec 2;23(23):2336-45Stewart-Ornstein J et al., Current biology : CB, 2013 Dec 2;23(23):2336-45 Indirect GFP - wt vs TF overexpression Positive S288c Stress Estradiol induced N/A
PubMed external link Elfving N et al., Nucleic acids research, 2014 May;42(9):5468-82Elfving N et al., Nucleic acids research, 2014 May;42(9):5468-82 Indirect Microarray analysis - wt vs TF overexpression Positive S288c Unstressed log-phase growth (control) SD + glucose + estradiol induction N/A
PubMed external link Gutin J et al., Molecular systems biology, 2015 Oct 7;11(10):829Gutin J et al., Molecular systems biology, 2015 Oct 7;11(10):829 Indirect GFP - wt vs TF mutant Positive S288c Unstressed log-phase growth (control) Log phase N/A
PubMed external link Cho BR et al., Biochimica et biophysica acta. Gene regulatory mechanisms, 2017 Jun;1860(6):695-704Cho BR et al., Biochimica et biophysica acta. Gene regulatory mechanisms, 2017 Jun;1860(6):695-704 Indirect RT-PCR - wt vs TF mutant Positive BY4741 Stress 1 mM H2O2 N/A
Indirect RT-PCR - wt vs TF mutant Positive BY4741 Carbon source quality/availability 2% lactic acid N/A
Indirect RT-PCR - wt vs TF mutant Positive BY4741 Unstressed log-phase growth (control) 2% glucose N/A
PubMed external link Rajvanshi PK et al., The Journal of biological chemistry, 2017 Nov 10;292(45):18628-18643Rajvanshi PK et al., The Journal of biological chemistry, 2017 Nov 10;292(45):18628-18643 Direct ChIP N/A BY4741 Carbon source quality/availability 2% or 6% glucose, stationary phase N/A
PubMed external link Kuang Z et al., eLife, 2017 Sep 26;6():Kuang Z et al., eLife, 2017 Sep 26;6(): Direct ChIP-seq N/A BY5764 Unstressed log-phase growth (control) YPD 30.C N/A
PubMed external link Bai C et al., PloS one, 2020;15(8):e0237540Bai C et al., PloS one, 2020;15(8):e0237540 Indirect BETA-galactosidase activity WT vs. TF double mutant + plasmid with promoter sequence Positive BY4741 Stress YNB (-ura) + 0.7M NaCl (1 hour after exposure) N/A
Indirect BETA-galactosidase activity WT vs. TF quadruple mutant + plasmid with promoter sequence Positive SP1 Stress YNB (-ura) + 0.7M NaCl (1 hour after exposure) N/A
Indirect BETA-galactosidase activity WT vs. TF triple mutant + plasmid with promoter sequence Positive BY4741 Stress YNB (-ura) + 0.7M NaCl (1 hour after exposure) N/A
Indirect RT-PCR - wt vs. TF double mutant Positive BY4741 Stress YPD + 0,7M NaCl (1 hour after exposure) N/A
Indirect RT-PCR - wt vs. TF quadruple mutant Positive SP1 Stress YPD + 0,7M NaCl (1 hour after exposure) N/A
PubMed external link Dai B et al., Acta biochimica et biophysica Sinica, 2021 Dec 8;53(12):1723-1730Dai B et al., Acta biochimica et biophysica Sinica, 2021 Dec 8;53(12):1723-1730 Indirect flow cytometry - GFP fluorescence Positive W303 Cell cycle/morphology exposed to different QSMs for 45 min (quorum-sensing molecule), Selective Complete medium (SC, -His) N/A
PubMed external link Jonas F et al., Nucleic acids research, 2023 Jun 9;51(10):4831-4844Jonas F et al., Nucleic acids research, 2023 Jun 9;51(10):4831-4844 Direct ChEC-seq N/A BY4741 Unstressed log-phase growth (control) SC medium N/A
PubMed external link Sweeney K et al., Cell reports, 2023 May 30;42(5):112426Sweeney K et al., Cell reports, 2023 May 30;42(5):112426 Indirect mCitrine reporter - wt vs TF light activation Positive S288C Unstressed log-phase growth (control) LFM medium + light N/A
PubMed external link Watanabe D et al., NPJ science of food, 2023 Jul 21;7(1):37Watanabe D et al., NPJ science of food, 2023 Jul 21;7(1):37 Indirect RT-PCR - wt vs TF double mutant Positive BY4741 Carbon source quality/availability YPD 20% glucose medium (fermentation stationary phase) N/A