S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Hac1p	YFL031W	PubMed Ogawa N et al., Genes to cells : devoted to molecular & cellular mechanisms, 2004 Feb;9(2):95-104	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Stress	SC(-Leu) medium + tunicamycin (5 Âµg/mL) for 1h	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	5.0666179922648
		PubMed Hou J et al., FEMS yeast research, 2014 May;14(3):481-94	Indirect	Microarray analysis - WT vs TF Deletion	Negative	cen.pk-113-5D	Stress	The strains were inoculated into SD-Ura medium and grown to OD600 nm = 0.4. 2 mM DTT was added into the medium to induce ER stress for 2 h.	-9.610468
		PubMed Nair R et al., AMB Express, 2018 Jul 16;8(1):116	Indirect	RNA-seq - wt vs TF mutant	Positive	BrUn1362	Stress	Tunicamycin	N/A
			Indirect	RNA-seq - wt vs TF mutant	Positive	BrUn1362	Stress	5mM DTT	N/A
			Indirect	RNA-seq - wt vs TF mutant	Positive	BrUn1362	Unstressed log-phase growth (control)	Control, YPD, 30.C	N/A
			Indirect	Ribo-seq: WT vs TF mutant	Positive	BrUn1362	Stress	Tunicamycin	N/A
			Indirect	Ribo-seq: WT vs TF mutant	Positive	BrUn1362	Stress	5mM DTT	N/A
			Indirect	Ribo-seq: WT vs TF mutant	Positive	BrUn1362	Unstressed log-phase growth (control)	Control, YPD, 30.C	N/A