Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Group		 Environmental
Condition		 Log2FC
Aft1p YGL071W PubMed external link Lee TI et al., Science (New York, N.Y.), 2002 Oct 25;298(5594):799-804Lee TI et al., Science (New York, N.Y.), 2002 Oct 25;298(5594):799-804 Direct Chip-on-chip N/A S288c Unstressed log-phase growth (control) YPD medium; mid-log phase N/A
PubMed external link De Freitas JM et al., The Journal of biological chemistry, 2004 Feb 6;279(6):4450-8De Freitas JM et al., The Journal of biological chemistry, 2004 Feb 6;279(6):4450-8 Indirect RT-PCR - wt vs TF mutant Positive BY4741 Unstressed log-phase growth (control) YPD medium; Cell were grown to early log phase; N/A
PubMed external link Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 Direct Chip-on-chip N/A S288c Unstressed log-phase growth (control) SC medium; mid-log phase N/A
PubMed external link Pagani MA et al., Molecular microbiology, 2007 Jul;65(2):521-37Pagani MA et al., Molecular microbiology, 2007 Jul;65(2):521-37 Indirect Microarray analysis - WT vs TF Deletion Positive BY4741 Unstressed log-phase growth (control) Grown in YPD to OD = 0.8 at 28°C. Centrifugation and resuspension in fresh YPD for periods of 30 and 60 min. Transcription factor gene deletion. N/A
PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Positive BY4741; S288C; R1158 Unstressed log-phase growth (control) Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. 1.5919035821813
PubMed external link Berthelet S et al., Genetics, 2010 Jul;185(3):1111-28Berthelet S et al., Genetics, 2010 Jul;185(3):1111-28 Indirect Microarray analysis - WT vs TF Deletion Positive YKB779 Unstressed log-phase growth (control) Grown in YPD at 30°C to OD600 of 0.4. Transcription factor gene deletion. 2.37165
PubMed external link Ros-Carrero C et al., Biochimica et biophysica acta. Gene regulatory mechanisms, 2020 Jul;1863(7):194522Ros-Carrero C et al., Biochimica et biophysica acta. Gene regulatory mechanisms, 2020 Jul;1863(7):194522 Indirect lacZ - wt vs TF mutant Positive BY4741 Ion/metal/phosphate/sulfur/vitamin availability SC-Ura medium with 100 microM BPS for 6 h (Iron Deficiency) N/A
Indirect RT-PCR - wt vs TF mutant Positive BY4741 Ion/metal/phosphate/sulfur/vitamin availability SC-Ura medium with 100 microM BPS for 6 h (Iron Deficiency) N/A
PubMed external link Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 Direct ChIP-exo N/A BY4741 Unstressed log-phase growth (control) YPD medium, 25.C N/A