S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition	Log2FC
Rim101p	YGR035C	PubMed Lamb TM et al., Molecular and cellular biology, 2003 Jan;23(2):677-86	Indirect	Microarray analysis - WT vs TF Deletion	Positive	TLY941	Yeast growth media (yeast-peptone-dextrose [YPD], yeast-peptone-acetate, and synthetic complete) were of standard composition	N/A
		PubMed Read T et al., PLoS genetics, 2016 Jan;12(1):e1005746	Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	L6441	Cells were grown in 100 ml of CSD (Chelex-treated synthetic defined medium) containing <100 nM of zinc. Cells were inoculated from overnight cultures into CSD at an initial OD600 = 0.01 and grown to mid-log phase (OD600 ≈ 0.5) before RNA isolation.	2.62381376179877
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	L6441	Grown to mid-log phase in standard YPD media. Transcription factor gene deletion.	2.62381376179877