Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Condition		 Log2FC
Rim101p YHL048W PubMed external link Lamb TM et al., Molecular and cellular biology, 2003 Jan;23(2):677-86Lamb TM et al., Molecular and cellular biology, 2003 Jan;23(2):677-86 Indirect Microarray analysis - WT vs TF Deletion Positive TLY941 Yeast growth media (yeast-peptone-dextrose [YPD], yeast-peptone-acetate, and synthetic complete) were of standard composition N/A
PubMed external link Shock TR et al., Eukaryotic cell, 2009 Apr;8(4):606-16Shock TR et al., Eukaryotic cell, 2009 Apr;8(4):606-16 Indirect Microarray analysis - wt vs TF mutant Positive S288c Exponential phase cells cultivated in YNB (yeast nitrogen base), 2% glucose and 2.65 g/L NH4(SO4)2 N/A
PubMed external link Read T et al., PLoS genetics, 2016 Jan;12(1):e1005746Read T et al., PLoS genetics, 2016 Jan;12(1):e1005746 Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4742 Cells were grown in 100 ml of CSD (Chelex-treated synthetic defined medium) containing <100 nM of zinc. Cells were inoculated from overnight cultures into CSD at an initial OD600 = 0.01 and grown to mid-log phase (OD600 ≈ 0.5) before RNA isolation. 0.750322190263777
Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4742 Grown to mid-log phase in standard YPD media. Transcription factor gene deletion. 0.750322190263777