Yeastract
YEASTRACT+ INESC-ID IST IBB
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Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor		 Target
ORF/Genes		 References Evidence
Code		 Evidence
Experiment		 Association
Type		 Strain Environmental
Condition		 Log2FC
Rph1p YHR137W PubMed external link Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 Indirect Microarray analysis - WT vs TF Deletion Positive BY4741; S288C; R1158 Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. 0.98968468254489
PubMed external link Shu WJ et al., Nucleic acids research, 2020 Sep 4;48(15):8360-8373Shu WJ et al., Nucleic acids research, 2020 Sep 4;48(15):8360-8373 Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Steady state carbon-limited chemostat cultures operated at a dilution rate of 0.05 per h by continuous addition of medium (feed concentration of glucose, 10 g/liter) at 30°C. pH controlled at 5, aerated with 0.5 volume of air/volume of liquid/min and with 800 rpm agitation. Transcription factor gene deletion. 1.44346484857355
Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Ethanol medium - Overexpression media lacked leucine to ensure plasmid selection. The cultures grown for 70 h in ethanol medium were diluted twice with a fresh medium to ensure continuous growth. 1.6672616355491
Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Grown in YPD to OD600 of 0.8 at 30 ºC. Transcription factor gene deletion. 1.44346484857355
Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Grown in YPD to OD600 of 0.8 at 30 ºC. Treated with rapamycin for 2h (100 nM). Transcription factor gene deletion. 1.6672616355491
PubMed external link Fang W et al., Cell reports, 2022 Apr 12;39(2):110672Fang W et al., Cell reports, 2022 Apr 12;39(2):110672 Indirect RNA-seq analysis - WT vs TF Deletion Negative CEN.PK Yeast cells grown to log phase in YPL medium from 0.1 OD. Transcription factor gene deletion. -0.457880418673055
Indirect RNA-seq analysis - WT vs TF Deletion Positive CEN.PK Yeast cells grown to log phase in YPL medium from 0.1 OD with switch to SL minimal medium for 1h. Transcription factor gene deletion. 0.638736783455445
PubMed external link Couvillion M et al., eLife, 2022 May 16;11():Couvillion M et al., eLife, 2022 May 16;11(): Indirect RNA-seq analysis - WT vs TF Deletion Negative BY4741 Overnight cultures grown in YPD medium were diluted to OD600 = 0.05 in 1 L YPD and incubated at 30 °C with 200 rpm shaking to mid-log phase (OD600 = 0.6–0.8). Transcription factor gene deletion. -1.18713830151817
PubMed external link Glazier VE et al., mBio, 2023 Oct 31;14(5):e0152123Glazier VE et al., mBio, 2023 Oct 31;14(5):e0152123 Indirect RNA-seq analysis - WT vs TF Deletion Positive BY4741 Cultured in minimal medium (1.7 g/L YNB, 5 g/L ammonium sulfate, 20 g/L glucose, 80 mg/L histidine, 80 mg/L methionine, 80 mg/L uracil and 240 mg/L leucine) with 200 rpm orbital shaking at 30°C, pH 5.5, until the mid-exponential phase (OD600 = 0.6). Transcription factor gene deletion. 2.98535729563152