The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Group |
Environmental Condition |
Log2FC |
|
Mcm1p
|
YJL157C
|
PubMed
Kuo MH et al., Molecular and cellular biology, 1994 Jan;14(1):348-59Kuo MH et al., Molecular and cellular biology, 1994 Jan;14(1):348-59 |
Direct |
Library of genomic binding sites |
N/A |
S288c |
In vitro |
in vitro |
N/A |
PubMed
Gailus-Durner V et al., Molecular and cellular biology, 1996 Jun;16(6):2777-86Gailus-Durner V et al., Molecular and cellular biology, 1996 Jun;16(6):2777-86 |
Indirect |
Northern blot - wt vs TF overexpression |
Positive |
S288c |
Stress |
3h 37ºC |
N/A |
PubMed
Simon I et al., Cell, 2001 Sep 21;106(6):697-708Simon I et al., Cell, 2001 Sep 21;106(6):697-708 |
Direct |
Chip-on-chip |
N/A |
S288c |
Unstressed log-phase growth (control) |
YPD medium; mid-log phase |
N/A |
PubMed
Schüller HJ, Current genetics, 2003 Jun;43(3):139-60Schüller HJ, Current genetics, 2003 Jun;43(3):139-60 |
Direct |
Chip-on-chip |
N/A |
S288c |
Cell cycle/morphology |
YPD medium + alpha-factor |
N/A |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
N/A |
N/A |
PubMed
Tuch BB et al., PLoS biology, 2008 Feb;6(2):e38Tuch BB et al., PLoS biology, 2008 Feb;6(2):e38 |
Direct |
Chip-on-chip |
N/A |
S288c |
Cell cycle/morphology |
YPD medium or YPD medium + alpha-factor induction |
N/A |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
Unstressed log-phase growth (control) |
YPD medium, 25.C |
N/A |
|