S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Rim101p	YKL096W	PubMed Lamb TM et al., Molecular and cellular biology, 2003 Jan;23(2):677-86	Indirect	Microarray analysis - WT vs TF Deletion	Positive	TLY941	Unstressed log-phase growth (control)	Yeast growth media (yeast-peptone-dextrose [YPD], yeast-peptone-acetate, and synthetic complete) were of standard composition	N/A
		PubMed Shock TR et al., Eukaryotic cell, 2009 Apr;8(4):606-16	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	Exponential phase cells cultivated in YNB (yeast nitrogen base), 2% glucose and 2.65 g/L NH4(SO4)2	N/A
		PubMed Nishizawa M et al., Eukaryotic cell, 2010 Jun;9(6):943-51	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	SD medium	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	2.0583468982315
		PubMed Read T et al., PLoS genetics, 2016 Jan;12(1):e1005746	Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	L6441	Ion/metal/phosphate/sulfur/vitamin availability	Cells were grown in 100 ml of CSD (Chelex-treated synthetic defined medium) containing <100 nM of zinc. Cells were inoculated from overnight cultures into CSD at an initial OD600 = 0.01 and grown to mid-log phase (OD600 ≈ 0.5) before RNA isolation.	4.60332936842046
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	L6441	Unstressed log-phase growth (control)	Grown to mid-log phase in standard YPD media. Transcription factor gene deletion.	4.60332936842046