S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition	Log2FC
Bas1p	YKR080W	PubMed Denis V et al., Molecular & general genetics : MGG, 1998 Aug;259(3):246-55	Indirect	lacZ - wt vs TF mutant	Positive	L3079	SD medium low adenine	N/A
		PubMed Lee TI et al., Science (New York, N.Y.), 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase	N/A
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase	N/A
		PubMed Subramanian M et al., Molecular microbiology, 2005 Jul;57(1):53-69	Indirect	Microarray analysis - wt vs TF mutant	N/A	S288c	N/A	N/A
		PubMed Workman CT et al., Science (New York, N.Y.), 2006 May 19;312(5776):1054-9	Direct	Chip-on-chip	N/A	S288c	N/A	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	1.3459467115241
		PubMed Fendt SM et al., Molecular systems biology, 2010 Nov 30;6():432	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium; mid-log phase	N/A
		PubMed Yi DG et al., FEBS letters, 2015 Aug 19;589(18):2409-16	Direct	ChIP-seq	N/A	S288c	YPA	N/A
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	SK1	Cells from a stationary culture in YPD medium were inoculated into fresh YPD medium to a final concentration equivalent to an A 600 of 0.25, and grown at 30 °C for 12 h.	0.349265233246814
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	SK1	Cells were grown in YPA for 13.5–14 hr at 30°, harvested, resuspended in 2% potassium acetate, and sporulated at 30°. Then, 15 OD600 units of cells were collected at 4 hr in meiosis for RNAseq. Transcription factor gene deletion.	0.349265233246814
		PubMed Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314	Direct	ChIP-exo	N/A	BY4741	YPD medium, 25.C	N/A