S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Aft2p	YMR058W	PubMed Blaiseau PL et al., The Journal of biological chemistry, 2001 Sep 7;276(36):34221-6	Indirect	Northern blot - wt vs TF mutant	Positive	CM3260	Ion/metal/phosphate/sulfur/vitamin availability	Iron depletion; cells in log phase grown in iron and copper limiting medium without iron addition	N/A
			Indirect	Northern blot - wt vs TF mutant	Positive	CM3260	Ion/metal/phosphate/sulfur/vitamin availability	Iron repletion; cells in log phase grown in iron and copper limiting medium supplemented with 100 microM iron	N/A
			Indirect	lacZ - wt vs TF mutant	Positive	CM3260	Ion/metal/phosphate/sulfur/vitamin availability	Iron depletion; cells in log phase grown in iron and copper limiting medium without iron addition	N/A
			Indirect	lacZ - wt vs TF mutant	Positive	CM3260	Ion/metal/phosphate/sulfur/vitamin availability	Iron repletion; cells in log phase grown in iron and copper limiting medium supplemented with 100 microM iron	N/A
		PubMed Rutherford JC et al., Proceedings of the National Academy of Sciences of the United States of America, 2001 Dec 4;98(25):14322-7	Direct	EMSA	N/A	S288c	In vitro	in vitro	N/A
		PubMed Courel M et al., Molecular and cellular biology, 2005 Aug;25(15):6760-71	Indirect	Northern blot WT vs TF mutant	Negative	Y14438	Ion/metal/phosphate/sulfur/vitamin availability	Iron-depleted conditions - Defined medium (iron-limiting and copper-limiting yeast nitrogen base ); 30.C.	N/A
			Indirect	Northern blot WT vs TF mutant	Positive	Y14438	Ion/metal/phosphate/sulfur/vitamin availability	Iron- replete conditions - Defined medium (iron-limiting and copper-limiting yeast nitrogen base ) with 100uM ferric ammonium sulfate; 30.C.	N/A
			Indirect	Northern blot - wt vs TF mutant	Positive	SCMC01	Ion/metal/phosphate/sulfur/vitamin availability	Iron-depleted conditions - Defined medium (iron-limiting and copper-limiting yeast nitrogen base ); 30.C.	N/A
			Indirect	Northern blot - wt vs TF mutant	Positive	SCMC01	Ion/metal/phosphate/sulfur/vitamin availability	Iron- replete conditions - Defined medium (iron-limiting and copper-limiting yeast nitrogen base ) with 100uM ferric ammonium sulfate; 30.C.	N/A
			Indirect	Microarray analysis - wt vs TF mutant	Positive	SCMC01	Ion/metal/phosphate/sulfur/vitamin availability	Iron-depleted conditions - Defined medium (iron-limiting and copper-limiting yeast nitrogen base ); 30.C.	N/A
		PubMed Dubacq C et al., Molecular genetics and genomics : MGG, 2006 Feb;275(2):114-24	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	Unstressed log-phase growth (control)	YPD	N/A
		PubMed Gonçalves IR et al., Genetics, 2014 Jan;196(1):149-60	Direct	EMSA	N/A	S288c	In vitro	in vitro	N/A
		PubMed Pérez-Sampietro M et al., Scientific reports, 2016 Sep 13;6():32836	Indirect	Northern blot - wt vs TF mutant	Positive	S288c	Stress	5h treatment with Sodium selenite	N/A
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	W303-1A	Carbon source quality/availability	Grown at 30°C in YP (1% yeast extract, 2% bacto peptone, Difco, Detroit, MI) 2% raffinose medium.	0.762043110403008
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	W303-1A	Stress	Grown in YPD medium until 1 × 10^7 cells/ml. Addition of sodium selenite (1mM) and sampled after 5h. Transcription factor gene deletion.	0.762043110403008
		PubMed Pujol-Carrion N et al., Biochimica et biophysica acta. Molecular cell research, 2021 Apr;1868(5):118974	Indirect	lacZ - wt vs TF mutant	Positive	CML128	Unstressed log-phase growth (control)	SD medium	N/A
			Indirect	lacZ - wt vs TF mutant	Positive	CML128	Ion/metal/phosphate/sulfur/vitamin availability	SD medium Fe depleted	N/A
			Indirect	lacZ - wt vs TF mutant	Positive	CML128	Ion/metal/phosphate/sulfur/vitamin availability	SD medium Fe repleted (10mM, 6h)	N/A