S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Group	Environmental Condition	Log2FC
Pho2p	YMR300C	PubMed Denis V et al., Molecular microbiology, 1998 Nov;30(3):557-66	Indirect	lacZ - wt vs TF mutant	Positive	L3079	Unstressed log-phase growth (control)	SD media, mid-exponential	N/A
		PubMed Subramanian M et al., Molecular microbiology, 2005 Jul;57(1):53-69	Indirect	Microarray analysis - wt vs TF mutant	N/A	S288c	N/A	N/A	N/A
		PubMed Tournu H et al., Eukaryotic cell, 2005 Oct;4(10):1687-96	Direct	ChIP	N/A	S288c	Unstressed log-phase growth (control)	Exponential-phase cells cultivated in SC growth medium without adenine	N/A
		PubMed Koehler RN et al., Eukaryotic cell, 2007 Aug;6(8):1474-85	Indirect	lacZ - wt vs TF overexpression	Positive	S288c	Unstressed log-phase growth (control)	constitutive expression of a Bas1-Pho2 fusion; medium lacking adenine (derepressing conditions)	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Unstressed log-phase growth (control)	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	1.2120367008976
		PubMed Fendt SM et al., Molecular systems biology, 2010 Nov 30;6():432	Indirect	Microarray analysis - WT vs TF Deletion	Positive	FY4	Unstressed log-phase growth (control)	Grown in minimal medium batch cultures with 10 g/L glucose at 30°C, 300 rpm and exponential growth. Transcription factor gene deletion.	1.55
		PubMed He BZ et al., eLife, 2017 May 9;6():He BZ et al., eLife, 2017 May 9;6():	Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	K699	Unstressed log-phase growth (control)	100 ml of cell culture grown to OD600nm (600 nm) of 1.5.	0.243604534106252
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	K699	Ion/metal/phosphate/sulfur/vitamin availability	Grown in phosphate-free SC medium (Phosphate starvation) at 30°C with shaking. All transcriptional profiling experiments were done in the pho80∆ background. Transcription factor gene deletion.	0.243604534106252