S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition	Log2FC
Aft1p	YNR060W	PubMed Martins LJ et al., The Journal of biological chemistry, 1998 Sep 11;273(37):23716-21	Direct	DNA footprinting	Positive	S288c	Minimal medium; mid-log phase	N/A
		PubMed Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104	Direct	Chip-on-chip	N/A	S288c	SC medium; mid-log phase	N/A
		PubMed Courel M et al., Molecular and cellular biology, 2005 Aug;25(15):6760-71	Indirect	Microarray WT vs TF mutant	Negative	Y14438	Iron-depleted conditions - Defined medium (iron-limiting and copper-limiting yeast nitrogen base ); 30.C.	N/A
			Indirect	Microarray analysis - wt vs TF mutant	Negative	SCMC01	Iron-depleted conditions - Defined medium (iron-limiting and copper-limiting yeast nitrogen base ); 30.C.	N/A
		PubMed Dubacq C et al., Molecular genetics and genomics : MGG, 2006 Feb;275(2):114-24	Indirect	Microarray analysis - wt vs TF mutant	Positive	S288c	YPD medium + 200mM hydroxyurea	N/A
		PubMed Pagani MA et al., Molecular microbiology, 2007 Jul;65(2):521-37	Indirect	Microarray analysis - wt vs TF mutant	Negative	BY4741	aft1DELTA versus wt: Cells exposed to 5mM ZnCl2 for 60 minutes in YPD media	N/A
		PubMed Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77	Indirect	Microarray analysis - WT vs TF Deletion	Positive	BY4741; S288C; R1158	Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion.	0.66232200941861
		PubMed Berthelet S et al., Genetics, 2010 Jul;185(3):1111-28	Indirect	Microarray analysis - WT vs TF Deletion	Positive	YKB779	Grown in YPD at 30°C to OD600 of 0.4. Transcription factor gene deletion.	3.093013