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Regulation Reference(s)
The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription
Factor |
Target
ORF/Genes |
References |
Evidence
Code |
Evidence
Experiment |
Association
Type |
Strain |
Environmental
Condition |
Log2FC |
|
Rph1p
|
YOL117W
|
PubMed 
Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic acids research, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - WT vs TF Deletion |
Negative |
BY4741; S288C; R1158 |
Standard YPD conditions Dataset ewxtracted from The Longhorn Array Database (LAD). Transcription factor gene deletion. |
-0.35348103726043 |
|
PubMed
Fang W et al., Cell reports, 2022 Apr 12;39(2):110672Fang W et al., Cell reports, 2022 Apr 12;39(2):110672 |
Indirect |
RNA-seq analysis - WT vs TF Deletion |
Negative |
CEN.PK |
Yeast cells grown to log phase in YPL medium from 0.1 OD. Transcription factor gene deletion. |
-0.50783317383384 |
|
PubMed
Glazier VE et al., mBio, 2023 Oct 31;14(5):e0152123Glazier VE et al., mBio, 2023 Oct 31;14(5):e0152123 |
Indirect |
RNA-seq analysis - WT vs TF Deletion |
Positive |
BY4741 |
Cultured in minimal medium (1.7 g/L YNB, 5 g/L ammonium sulfate, 20 g/L glucose, 80 mg/L histidine, 80 mg/L methionine, 80 mg/L uracil and 240 mg/L leucine) with 200 rpm orbital shaking at 30°C, pH 5.5, until the mid-exponential phase (OD600 = 0.6). Transcription factor gene deletion. |
0.351859573020272 |
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