S.cerevisiae - Yeastract

Regulation Reference(s)

The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.

Transcription Factor	Target ORF/Genes	References	Evidence Code	Evidence Experiment	Association Type	Strain	Environmental Condition	Log2FC
Swi4p	YPR120C	PubMed Schwob E et al., Genes & development, 1993 Jul;7(7A):1160-75	N/A		N/A	S288c	N/A	N/A
		PubMed Lee TI et al., Science (New York, N.Y.), 2002 Oct 25;298(5594):799-804	Direct	Chip-on-chip	N/A	S288c	YPD medium; mid-log phase	N/A
		PubMed Bean JM et al., Genetics, 2005 Sep;171(1):49-61	Indirect	Microarray analysis - wt vs TF mutant	N/A	S288c	N/A	N/A
		PubMed Workman CT et al., Science (New York, N.Y.), 2006 May 19;312(5776):1054-9	Direct	Chip-on-chip	N/A	S288c	N/A	N/A
		PubMed Chua G et al., Proceedings of the National Academy of Sciences of the United States of America, 2006 Aug 8;103(32):12045-50	Indirect	Microarray analysis - wt vs TF overexpression	Positive	N/A	Cells grown in selective medium supplemented with 2% raffinose before induction with 2% galactose for 3 h	N/A
		PubMed Badis G et al., Molecular cell, 2008 Dec 26;32(6):878-87	Direct	ChIP	N/A	S288c	N/A	N/A
		PubMed Busnelli S et al., Biochimica et biophysica acta, 2013 Dec;1833(12):3254-3264	Direct	ChIP	N/A	S288c	Grown in synthetic medium containing 2% glucose, synchronized in G1-phase by Î±-factor treatment and released.Â	N/A
		PubMed Hendler A et al., PLoS genetics, 2017 May;13(5):e1006778	Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	15Daub	Yeast growth media (yeast-peptone-dextrose [YPD], yeast-peptone-acetate, and synthetic complete) were of standard composition	0.392596064491428
			Indirect	RNA-seq analysis - WT vs TF Deletion	Positive	15Daub	Cells were grown in 7 ml of SC over-night at 30°C. Cells were synchronized by alpha factor arrest and release and after 30 minutes they were collected. Transcription factor gene deletion.	0.392596064491428